| Draft Picks | ||||||
| Rd | # | Orig Team | # | Curr Team | Player | Overall |
| 1 | 1 | NYM | 2023 Michael Harris II | 1 | ||
| 1 | 2 | Mia | 2023 Hunter Greene | 2 | ||
| 1 | 3 | ChN | 2023 Corbin Carroll | 3 | ||
| 1 | 4 | SD | 2023 Nick Lodolo | 4 | ||
| 1 | 5 | Mil | 2023 Chris Bassitt | 5 | ||
| 1 | 6 | SF | Tor | 2023 Brendan Donovan | 6 | |
| 1 | 7 | Cin | 2023 Joey Meneses | 7 | ||
| 1 | 8 | Was | 2023 Carlos Rodon | 8 | ||
| 1 | 9 | SF | 2023 Jake Fraley | 9 | ||
| 1 | 10 | LA | 2023 Gabriel Moreno | 10 | ||
| 1 | 11 | Pit | 2023 Brett Baty | 11 | ||
| 1 | 12 | StL | 2023 Vaughn Grissom | 12 | ||
| 2 | 1 | Mia | 2023 Miles Mikolas | 13 | ||
| 2 | 2 | NYM | 2023 Matt Chapman | 14 | ||
| 2 | 3 | SD | 2023 Jose Quintana | 15 | ||
| 2 | 4 | ChN | 2023 Ha-Seong Kim | 16 | ||
| 2 | 5 | SF | 2023 Jack Suwinski | 17 | ||
| 2 | 6 | Mil | 2023 Miguel Vargas | 18 | ||
| 2 | 7 | Cin | 2023 Bryce Elder | 19 | ||
| 2 | 8 | Tor | 2023 Nolan Gorman | 20 | ||
| 2 | 9 | LA | 2023 Alexis Diaz | 21 | ||
| 2 | 10 | Was | 2023 Evan Phillips | 22 | ||
| 2 | 11 | Pit | 2023 Bryson Stott | 23 | ||
| 2 | 12 | StL | 2023 Collin McHugh | 24 | ||
| 3 | 1 | Mia | 2023 Garrett Mitchell | 25 | ||
| 3 | 2 | NYM | 2023 Rodolfo Castro | 26 | ||
| 3 | 3 | SD | 2023 Matt Olson | 27 | ||
| 3 | 4 | ChN | 2023 C.J. Abrams | 28 | ||
| 3 | 5 | SF | 2023 Mark Canha | 29 | ||
| 3 | 6 | Mil | 2023 Ezequiel Tovar | 30 | ||
| 3 | 7 | Cin | 2023 Trayce Thompson | 31 | ||
| 3 | 8 | Tor | 2023 Yonathan Daza | 32 | ||
| 3 | 9 | LA | 2023 Andre Pallante | 33 | ||
| 3 | 10 | Was | SD | 2023 Francisco Alvarez | 34 | |
| 3 | 11 | Pit | NYM | 2023 Nick Fortes | 35 | |
| 3 | 12 | StL | 2023 Daniel Bard | 36 | ||
| 4 | 1 | Mia | 2023 David Robertson | 37 | ||
| 4 | 2 | NYM | 2023 Ryne Nelson | 38 | ||
| 4 | 3 | SD | 2023 Hayden Wesneski | 39 | ||
| 4 | 4 | ChN | 2023 Christopher Morel | 40 | ||
| 4 | 5 | Mil | 2023 Luis Ortiz | 41 | ||
| 4 | 6 | Cin | 2023 Scott Effross | 42 | ||
| 4 | 7 | Tor | SF | 2023 Carlos Estevez | 43 | |
| 4 | 8 | LA | NYM | 2023 Jose Alvarado | 44 | |
| 4 | 9 | Was | SF | 2023 Chris Martin | 45 | |
| 4 | 10 | Pit | 2023 Seranthony Dominguez | 46 | ||
| 4 | 11 | StL | 2023 Daniel Vogelbach | 47 | ||
| 4 | 12 | Mil | 2 | 2023 Matthew Liberatore | 48 | |
| 5 | 1 | SD | 2023 MacKenzie Gore | 49 | ||
| 5 | 2 | ChN | 2023 Jakob Junis | 50 | ||
| 5 | 3 | SF | 2023 Steven Wilson | 51 | ||
| 5 | 4 | Mil | 2023 Dylan Lee | 52 | ||
| 5 | 5 | Cin | 2023 Anthony Bass | 53 | ||
| 5 | 6 | Tor | Cin | 2023 Nabil Crismatt | 54 | |
| 5 | 7 | LA | SF | 2023 Carl Edwards | 55 | |
| 5 | 8 | Was | 2023 Alek Thomas | 56 | ||
| 5 | 9 | Pit | 2023 Graham Ashcraft | 57 | ||
| 5 | 10 | StL | NYM | 2023 Chase De Jong | 58 | |
| 5 | 11 | Tor | 2 | 2023 Zack Thompson | 59 | |
| 6 | 1 | Mia | 2023 Raimel Tapia | 60 | ||
| 6 | 2 | SD | 2023 Erasmo Ramirez | 61 | ||
| 6 | 3 | ChN | 2023 Seiya Suzuki | 62 | ||
| 6 | 4 | SF | 2023 Albert Pujols | 63 | ||
| 6 | 5 | Mil | 2023 Nick Martinez | 64 | ||
| 6 | 6 | Cin | SD | 2023 Bailey Falter | 65 | |
| 6 | 7 | Tor | 2023 Keegan Thompson | 66 | ||
| 6 | 8 | LA | Tor | 2023 Riley Adams | 67 | |
| 6 | 9 | Was | SD | 2023 Austin Wynns | 68 | |
| 6 | 10 | Pit | 2023 Juan Yepez | 69 | ||
| 6 | 11 | Was | 2 | 2023 Alex Cobb | 70 | |
| 6 | 12 | Was | 3 | 2023 David Phelps | 71 | |
| 6 | 13 | Was | 4 | 2023 Yency Almonte | 72 | |
| 7 | 1 | Mia | SF | 2023 Diego Castillo | 73 | |
| 7 | 2 | NYM | 2023 Robert Suarez | 74 | ||
| 7 | 3 | SD | 2023 David Villar | 75 | ||
| 7 | 4 | ChN | 2023 Luis Gonzalez | 76 | ||
| 7 | 5 | SF | 2023 Max Muncy | 77 | ||
| 7 | 6 | Mil | 2023 Spencer Steer | 78 | ||
| 7 | 7 | Cin | 2023 Drew Smyly | 79 | ||
| 7 | 8 | Tor | 2023 Adrian Sampson | 80 | ||
| 7 | 9 | Was | 2023 JJ Bleday | 81 | ||
| 7 | 10 | Pit | 2023 Drey Jameson | 82 | ||
| 7 | 11 | NYM | 2 | 2023 Joel Kuhnel | 83 | |
| 7 | 12 | Tor | 2 | 2023 Caleb Ferguson | 84 | |
| 8 | 1 | Mia | 2023 Carson Kelly | 85 | ||
| 8 | 2 | NYM | StL | 2023 Zach Davies | 86 | |
| 8 | 3 | SD | NYM | 2023 Jose Berrios | 87 | |
| 8 | 4 | ChN | 2023 Joey Wendle | 88 | ||
| 8 | 5 | SF | Was | 2023 Braxton Garrett | 89 | |
| 8 | 6 | Mil | 2023 Luis Garcia | 90 | ||
| 8 | 7 | Cin | 2023 Cade Cavalli | 91 | ||
| 8 | 8 | Tor | ChN | 2023 Garrett Stubbs | 92 | |
| 8 | 9 | Was | 2023 Hoby Milner | 93 | ||
| 8 | 10 | Pit | Mil | 2023 Ryan Pepiot | 94 | |
| 8 | 11 | StL | 2023 Jurickson Profar | 95 | ||
| 9 | 1 | Mia | 2023 Ivan Herrera | 96 | ||
| 9 | 2 | SD | ChN | 2023 Cesar Hernandez | 97 | |
| 9 | 3 | ChN | 2023 Jose Azocar | 98 | ||
| 9 | 4 | SF | 2023 Connor Overton | 99 | ||
| 9 | 5 | Mil | 2023 Esteury Ruiz | 100 | ||
| 9 | 6 | Cin | Tor | 2023 Jace Peterson | 101 | |
| 9 | 7 | Tor | 2023 Sean Manaea | 102 | ||
| 9 | 8 | LA | 2023 Mike Clevinger | 103 | ||
| 9 | 9 | Was | 2023 TJ Friedl | 104 | ||
| 9 | 10 | Pit | 2023 Kyle Nelson | 105 | ||
| 9 | 11 | StL | 2023 Jean Segura | 106 | ||
| 10 | 1 | Mia | 2023 Charles Leblanc | 107 | ||
| 10 | 2 | ChN | LA | 2023 Nick Nelson | 108 | |
| 10 | 3 | SF | Tor | 2023 Tyler Rogers | 109 | |
| 10 | 4 | Mil | 2023 Brandon Hughes | 110 | ||
| 10 | 5 | Cin | 2023 Joe Mantiply | 111 | ||
| 10 | 6 | Tor | 2023 Austin Barnes | 112 | ||
| 10 | 7 | LA | 2023 Tanner Scott | 113 | ||
| 10 | 8 | Was | 2023 Tyler Matzek | 114 | ||
| 10 | 9 | Pit | 2023 Alec Burleson | 115 | ||
| 10 | 10 | StL | 2023 Steven Okert | 116 | ||
| 11 | 1 | Mia | 2023 Javier Assad | 117 | ||
| 11 | 2 | ChN | 2023 Tim Mayza | 118 | ||
| 11 | 3 | SF | 2023 Joely Rodriguez | 119 | ||
| 11 | 4 | Mil | 2023 Jose Herrera | 120 | ||
| 11 | 5 | Cin | 2023 Luis Cessa | 121 | ||
| 11 | 6 | Tor | 2023 John Brebbia | 122 | ||
| 11 | 7 | LA | 2023 Jake Woodford | 123 | ||
| 11 | 8 | Was | 2023 Tommy Henry | 124 | ||
| 11 | 9 | Pit | 2023 Cooper Hummel | 125 | ||
| 11 | 10 | StL | 2023 Cal Mitchell | 126 | ||
| 12 | 1 | ChN | 2023 Adam Ottavino | 127 | ||
| 12 | 2 | SF | 2023 Manny Banuelos | 128 | ||
| 12 | 3 | Mil | 2023 Peter Strzelecki | 129 | ||
| 12 | 4 | Cin | 2023 Kyle Gibson | 130 | ||
| 12 | 5 | Tor | 2023 Otto Lopez | 131 | ||
| 12 | 6 | LA | 2023 Stone Garrett | 132 | ||
| 12 | 7 | Was | 2023 Luke Voit | 133 | ||
| 12 | 8 | Pit | 2023 Hunter Harvey | 134 | ||
| 12 | 9 | StL | 2023 Alfonso Rivas | 135 | ||
| 13 | 1 | ChN | 2023 Orlando Arcia | 136 | ||
| 13 | 2 | SF | 2023 Mike Brosseau | 137 | ||
| 13 | 3 | Cin | 2023 Sean Bouchard | 138 | ||
| 13 | 4 | Was | 2023 Max Meyer | 139 | ||
| 13 | 5 | Pit | 2023 Ji Hwan Bae | 140 | ||
| 13 | 6 | StL | 2023 Jordan Groshans | 141 | ||
| 14 | 1 | SF | 2023 P.J. Higgins | 142 | ||
| 14 | 2 | Cin | 2023 Roberto Perez | 143 | ||
| 14 | 3 | Was | 2023 James Outman | 144 | ||
| 14 | 4 | Pit | 2023 Jackson Stephens | 145 | ||
| 14 | 5 | StL | 2023 Tucupita Marcano | 146 | ||
| 15 | 1 | SF | 2023 Michael Chavis | 147 | ||
| 15 | 2 | Cin | 2023 Mark Leiter | 148 | ||
| 15 | 3 | Was | 2023 Mark Vientos | 149 | ||
| 15 | 4 | Pit | 2023 Elehuris Montero | 150 | ||
| 16 | 1 | Cin | 2023 Ildemaro Vargas | 151 | ||
| 16 | 2 | Was | 2023 Anthony DeSclafani | 152 | ||
| 16 | 3 | Pit | 2023 Tyler Naquin | 153 | ||
| 17 | 1 | Cin | 2023 Daniel Hudson | 154 | ||
| 17 | 2 | Was | 2023 Michael Toglia | 155 | ||
| 17 | 3 | Pit | 2023 Liover Peguero | 156 | ||
| 18 | 1 | Cin | 2023 Nelson Velazquez | 157 | ||
| 18 | 2 | Was | 2023 Nick Madrigal | 158 | ||